The tutorials listed here under the Genomics tab include a set that can be run as a Genomics Workshop.
The modules in this workshop cover microbial genomics, from assembly to annotation and variant calling:
- Starting with Galaxy
- Training dataset
- Quality control
- Genome assembly with two tools - Velvet and Spades
- Genome annotation
- Variant finding
The analyses are conducted on the Galaxy platform, and links to training data are provided.
These modules can be delivered to a group workshop or used online independently.
If you have not yet used the Galaxy platform, we recommend following the modules in order.
If you are using these tutorials outside of a workshop and need access to Galaxy, you can follow the instructions on the homepage here to obtain your own mGVL instance with Galaxy and command line tools.
Other Genomics tutorials
- There are also additional tutorials listed under the “Genomics” tab (such as PacBio assembly), but these may require different data sets and tools.